Bioconductor Time Series

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3.2k

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limma design model.matrix time series splines

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by tleona3 • 0

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3.2k

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deseq2 ruvseq spike-in time course time series

updated 6.4 years ago by davide risso ▴ 950 • written 6.4 years ago by staceyborrego ▴ 20

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2.2k

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deseq2 time series time course

updated 3.7 years ago by Michael Love 42k • written 3.7 years ago by bsierieb ▴ 10

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2.0k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by kaiser.karim • 0

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1.8k

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rna-seq time series patient limma-voom

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by aec ▴ 90

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1.5k

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limma microarray time series DEG paired

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by kawess • 0

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1.3k

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deseq2 time series remove batch effect

5.2 years ago Nicola • 0

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1.3k

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deseq2 time series multiple factor design

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by Jane • 0

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1.0k

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limma time series help

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by rm1238 • 0

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873

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transcriptomics gene expression time series plant biology circadian Job

4.6 years ago dezer ▴ 10

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853

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deseq2 rnaseq repeated measures time series design formula

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by Dorien ▴ 10

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670

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scRNA-seq time series

3.9 years ago Bogdan ▴ 670

12 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180